HL_8K82_112

3D structure

PDB id

8K82 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUAUUC

Length

6 nucleotides

Bulged bases

8K82|1|C3|U|125

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8K82_112 not in the Motif Atlas

Homologous match to HL_5TBW_076

Geometric discrepancy: 0.1362

The information below is about HL_5TBW_076

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_45177.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

8K82|1|C3|G|124
8K82|1|C3|U|125
8K82|1|C3|A|126
8K82|1|C3|U|127
8K82|1|C3|U|128
8K82|1|C3|C|129

Current chains

Chain C3

5.8S rRNA

Nearby chains

Chain C1

Large subunit ribosomal RNA; LSU rRNA

Chain L2

Large ribosomal subunit protein eL41A