HL_8K82_117
3D structure
- PDB id
- 8K82 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GAUCG(1MA)AAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: 1MA
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8K82_117 not in the Motif Atlas
- Homologous match to HL_1YFG_003
- Geometric discrepancy: 0.1371
- The information below is about HL_1YFG_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8K82|1|C5|G|52
8K82|1|C5|A|53
8K82|1|C5|U|54
8K82|1|C5|C|55
8K82|1|C5|G|56
8K82|1|C5|1MA|57
8K82|1|C5|A|58
8K82|1|C5|A|59
8K82|1|C5|C|60
Current chains
- Chain C5
- tRNA
Nearby chains
- Chain C1
- Large subunit ribosomal RNA; LSU rRNA
- Chain CN
- General negative regulator of transcription subunit 5
- Chain LJ
- Large ribosomal subunit protein uL5A
- Chain Lo
- Large ribosomal subunit protein eL42A
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