HL_8K82_119

3D structure

PDB id

8K82 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AUUUUGUUGGUUUCU

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8K82_119 not in the Motif Atlas

Geometric match to HL_3IGI_005

Geometric discrepancy: 0.2866

The information below is about HL_3IGI_005

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_52651.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

29

Unit IDs

8K82|1|C2|A|829
8K82|1|C2|U|830
8K82|1|C2|U|831
8K82|1|C2|U|832
8K82|1|C2|U|833
8K82|1|C2|G|834
8K82|1|C2|U|835
8K82|1|C2|U|836
8K82|1|C2|G|837
8K82|1|C2|G|838
8K82|1|C2|U|839
8K82|1|C2|U|840
8K82|1|C2|U|841
8K82|1|C2|C|842
8K82|1|C2|U|843

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SL

Small ribosomal subunit protein uS17A