HL_8K82_122

3D structure

PDB id

8K82 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUGAUUUUAUGCAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8K82|1|C1|C|1563
8K82|1|C1|U|1564
8K82|1|C1|G|1565
8K82|1|C1|A|1566
8K82|1|C1|U|1567
8K82|1|C1|U|1568
8K82|1|C1|U|1569
8K82|1|C1|U|1570
8K82|1|C1|A|1571
8K82|1|C1|U|1572
8K82|1|C1|G|1573
8K82|1|C1|C|1574
8K82|1|C1|A|1575
8K82|1|C1|G|1576

Current chains

Chain C1

23S rRNA

Nearby chains

Chain C3

5.8S ribosomal RNA; 5.8S rRNA

Chain L2

Large ribosomal subunit protein eL41A

Chain LX

Large ribosomal subunit protein uL23