HL_8KAJ_007

3D structure

PDB id

8KAJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of SpyCas9-crRNA-tracrRNA complex bound to 16nt target DNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.42 Å

Loop

Sequence

GAGUC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8KAJ_007 not in the Motif Atlas

Geometric match to HL_5F9R_004

Geometric discrepancy: 0.2463

The information below is about HL_5F9R_004

Detailed Annotation

D-loop related

Broad Annotation

D-loop related

Motif group

HL_38901.2

Basepair signature

cWW-F-cSH

Number of instances in this motif group

7

Unit IDs

8KAJ|1|J|G|87
8KAJ|1|J|A|88
8KAJ|1|J|G|89
8KAJ|1|J|U|90
8KAJ|1|J|C|91

Current chains

Chain J

RNA (65-MER)

Nearby chains

Chain F

CRISPR-associated endonuclease Cas9/Csn1