HL_8OEQ_030
3D structure
- PDB id
- 8OEQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- AUGAGAACU
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8OEQ_030 not in the Motif Atlas
- Homologous match to HL_8C3A_031
- Geometric discrepancy: 0.0436
- The information below is about HL_8C3A_031
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_43993.1
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 141
Unit IDs
8OEQ|1|1|A|1458
8OEQ|1|1|U|1459
8OEQ|1|1|G|1460
8OEQ|1|1|A|1461
8OEQ|1|1|G|1462
8OEQ|1|1|A|1463
8OEQ|1|1|A|1464
8OEQ|1|1|C|1465
8OEQ|1|1|U|1466
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain AE
- 60S ribosomal protein L31-B
- Chain z
- 60S ribosomal protein L19-A
Coloring options: