HL_8OEQ_034
3D structure
- PDB id
- 8OEQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- GUUAAAAUUC
- Length
- 10 nucleotides
- Bulged bases
- 8OEQ|1|1|U|1602, 8OEQ|1|1|U|1603
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8OEQ_034 not in the Motif Atlas
- Homologous match to HL_8C3A_035
- Geometric discrepancy: 0.043
- The information below is about HL_8C3A_035
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_35087.1
- Basepair signature
- cWW-tWH-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
8OEQ|1|1|G|1595
8OEQ|1|1|U|1596
8OEQ|1|1|U|1597
8OEQ|1|1|A|1598
8OEQ|1|1|A|1599
8OEQ|1|1|A|1600
8OEQ|1|1|A|1601
8OEQ|1|1|U|1602
8OEQ|1|1|U|1603
8OEQ|1|1|C|1604
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain 8
- 60S ribosomal protein L25
- Chain AH
- 60S ribosomal protein L34-B
- Chain AM
- 60S ribosomal protein L39
- Chain z
- 60S ribosomal protein L19-A
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