HL_8OEQ_050

3D structure

PDB id

8OEQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GCUUCGGC

Length

8 nucleotides

Bulged bases

8OEQ|1|1|C|2448, 8OEQ|1|1|U|2450, 8OEQ|1|1|C|2451

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OEQ_050 not in the Motif Atlas

Homologous match to HL_8C3A_052

Geometric discrepancy: 0.0774

The information below is about HL_8C3A_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_70228.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

1

Unit IDs

8OEQ|1|1|G|2447
8OEQ|1|1|C|2448
8OEQ|1|1|U|2449
8OEQ|1|1|U|2450
8OEQ|1|1|C|2451
8OEQ|1|1|G|2452
8OEQ|1|1|G|2453
8OEQ|1|1|C|2454

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain l1

Ribosomal protein