HL_8OEQ_105

3D structure

PDB id

8OEQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

AUGAGAACU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OEQ_105 not in the Motif Atlas

Homologous match to HL_8C3A_031

Geometric discrepancy: 0.0793

The information below is about HL_8C3A_031

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

8OEQ|1|AS|A|1458
8OEQ|1|AS|U|1459
8OEQ|1|AS|G|1460
8OEQ|1|AS|A|1461
8OEQ|1|AS|G|1462
8OEQ|1|AS|A|1463
8OEQ|1|AS|A|1464
8OEQ|1|AS|C|1465
8OEQ|1|AS|U|1466

Current chains

Chain AS

25S ribosomal RNA

Nearby chains

Chain BK

Ribosomal protein L22

Chain BM

60S ribosomal protein L19-A

Chain BY

60S ribosomal protein L31-B