HL_8OEQ_107

3D structure

PDB id

8OEQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GAAGCU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OEQ_107 not in the Motif Atlas

Homologous match to HL_8C3A_033

Geometric discrepancy: 0.0564

The information below is about HL_8C3A_033

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8OEQ|1|AS|G|1540
8OEQ|1|AS|A|1541
8OEQ|1|AS|A|1542
8OEQ|1|AS|G|1543
8OEQ|1|AS|C|1544
8OEQ|1|AS|U|1545

Current chains

Chain AS

25S ribosomal RNA

Nearby chains

Chain BI

60S ribosomal protein L15-A

Chain CE

60S ribosomal protein L37-B