HL_8OEQ_124

3D structure

PDB id

8OEQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

8OEQ|1|AS|A|2350, 8OEQ|1|AS|A|2351, 8OEQ|1|AS|C|2352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OEQ_124 not in the Motif Atlas

Homologous match to HL_8C3A_051

Geometric discrepancy: 0.0426

The information below is about HL_8C3A_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

8OEQ|1|AS|G|2347
8OEQ|1|AS|G|2348
8OEQ|1|AS|G|2349
8OEQ|1|AS|A|2350
8OEQ|1|AS|A|2351
8OEQ|1|AS|C|2352
8OEQ|1|AS|G|2353
8OEQ|1|AS|G|2354
8OEQ|1|AS|G|2355
8OEQ|1|AS|C|2356

Current chains

Chain AS

25S ribosomal RNA

Nearby chains

Chain AX

60S ribosomal protein L3

Chain BZ

60S ribosomal protein L32