HL_8OEQ_131
3D structure
- PDB id
- 8OEQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- CAAAAGGG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8OEQ_131 not in the Motif Atlas
- Homologous match to HL_8C3A_058
- Geometric discrepancy: 0.0755
- The information below is about HL_8C3A_058
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_93324.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 26
Unit IDs
8OEQ|1|AS|C|2665
8OEQ|1|AS|A|2666
8OEQ|1|AS|A|2667
8OEQ|1|AS|A|2668
8OEQ|1|AS|A|2669
8OEQ|1|AS|G|2670
8OEQ|1|AS|G|2671
8OEQ|1|AS|G|2672
Current chains
- Chain AS
- 25S ribosomal RNA
Nearby chains
- Chain BE
- 60S ribosomal protein L10
- Chain BO
- 60S ribosomal protein L21-A
- Chain CJ
- 60S ribosomal protein L42-B
- Chain CL
- 60S ribosomal protein CAALFM_C304810CA
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