HL_8OEQ_153
3D structure
- PDB id
- 8OEQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- GUUGAUCCUGC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8OEQ_153 not in the Motif Atlas
- Homologous match to HL_8C3A_192
- Geometric discrepancy: 0.0581
- The information below is about HL_8C3A_192
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_89881.3
- Basepair signature
- cWW-tHW-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
8OEQ|1|B|G|7
8OEQ|1|B|U|8
8OEQ|1|B|U|9
8OEQ|1|B|G|10
8OEQ|1|B|A|11
8OEQ|1|B|U|12
8OEQ|1|B|C|13
8OEQ|1|B|C|14
8OEQ|1|B|U|15
8OEQ|1|B|G|16
8OEQ|1|B|C|17
Current chains
- Chain B
- 18S ribosomal RNA
Nearby chains
- Chain E
- Ribosomal protein S5
- Chain Z
- Ribosomal protein S23 (S12)
- Chain i
- 60S ribosomal protein CAALFM_C304810CA
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