HL_8OEQ_187
3D structure
- PDB id
- 8OEQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- CAAUUUAUACAG
- Length
- 12 nucleotides
- Bulged bases
- 8OEQ|1|CM|U|74, 8OEQ|1|CM|U|77
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8OEQ_187 not in the Motif Atlas
- Homologous match to HL_8C3A_193
- Geometric discrepancy: 0.0844
- The information below is about HL_8C3A_193
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_21248.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
8OEQ|1|CM|C|70
8OEQ|1|CM|A|71
8OEQ|1|CM|A|72
8OEQ|1|CM|U|73
8OEQ|1|CM|U|74
8OEQ|1|CM|U|75
8OEQ|1|CM|A|76
8OEQ|1|CM|U|77
8OEQ|1|CM|A|78
8OEQ|1|CM|C|79
8OEQ|1|CM|A|80
8OEQ|1|CM|G|81
Current chains
- Chain CM
- 18S ribosomal RNA
Nearby chains
- Chain CT
- 40S ribosomal protein S6
Coloring options: