HL_8OEQ_188

3D structure

PDB id

8OEQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GUAAUUC

Length

7 nucleotides

Bulged bases

8OEQ|1|CM|U|157

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OEQ_188 not in the Motif Atlas

Homologous match to HL_8C3A_194

Geometric discrepancy: 0.0395

The information below is about HL_8C3A_194

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_37824.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

302

Unit IDs

8OEQ|1|CM|G|152
8OEQ|1|CM|U|153
8OEQ|1|CM|A|154
8OEQ|1|CM|A|155
8OEQ|1|CM|U|156
8OEQ|1|CM|U|157
8OEQ|1|CM|C|158

Current chains

Chain CM

18S ribosomal RNA

Nearby chains

Chain CT

40S ribosomal protein S6

Chain DL

40S ribosomal protein S24