HL_8OEQ_191

3D structure

PDB id

8OEQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GAUGAUUC

Length

8 nucleotides

Bulged bases

8OEQ|1|CM|U|247

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OEQ_191 not in the Motif Atlas

Homologous match to HL_8P9A_195

Geometric discrepancy: 0.0699

The information below is about HL_8P9A_195

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_67772.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

13

Unit IDs

8OEQ|1|CM|G|241
8OEQ|1|CM|A|242
8OEQ|1|CM|U|243
8OEQ|1|CM|G|244
8OEQ|1|CM|A|245
8OEQ|1|CM|U|246
8OEQ|1|CM|U|247
8OEQ|1|CM|C|248

Current chains

Chain CM

18S ribosomal RNA

Nearby chains

Chain CR

40S ribosomal protein S4

Chain CY

40S ribosomal protein S11A