HL_8OEQ_200

3D structure

PDB id

8OEQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UGGGUAGCCAUUUAUGGCGAACCA

Length

24 nucleotides

Bulged bases

8OEQ|1|CM|U|710, 8OEQ|1|CM|U|711, 8OEQ|1|CM|U|713, 8OEQ|1|CM|C|716

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8OEQ|1|CM|U|699
8OEQ|1|CM|G|700
8OEQ|1|CM|G|701
8OEQ|1|CM|G|702
8OEQ|1|CM|U|703
8OEQ|1|CM|A|704
8OEQ|1|CM|G|705
8OEQ|1|CM|C|706
8OEQ|1|CM|C|707
8OEQ|1|CM|A|708
8OEQ|1|CM|U|709
8OEQ|1|CM|U|710
8OEQ|1|CM|U|711
8OEQ|1|CM|A|712
8OEQ|1|CM|U|713
8OEQ|1|CM|G|714
8OEQ|1|CM|G|715
8OEQ|1|CM|C|716
8OEQ|1|CM|G|717
8OEQ|1|CM|A|718
8OEQ|1|CM|A|719
8OEQ|1|CM|C|720
8OEQ|1|CM|C|721
8OEQ|1|CM|A|722

Current chains

Chain CM

18S ribosomal RNA

Nearby chains

Chain CR

40S ribosomal protein S4

Chain CT

40S ribosomal protein S6