HL_8OEQ_202

3D structure

PDB id

8OEQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CCUUUG

Length

6 nucleotides

Bulged bases

8OEQ|1|CM|U|766

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OEQ_202 not in the Motif Atlas

Homologous match to HL_8C3A_209

Geometric discrepancy: 0.1024

The information below is about HL_8C3A_209

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_76390.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

2

Unit IDs

8OEQ|1|CM|C|762
8OEQ|1|CM|C|763
8OEQ|1|CM|U|764
8OEQ|1|CM|U|765
8OEQ|1|CM|U|766
8OEQ|1|CM|G|767

Current chains

Chain CM

18S ribosomal RNA

Nearby chains

Chain CR

40S ribosomal protein S4

Chain CW

Ribosomal protein S4

Chain DL

40S ribosomal protein S24