HL_8OH6_023

3D structure

PDB id

8OH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

GUUGAAAUGAC

Length

11 nucleotides

Bulged bases

8OH6|1|1|U|1024

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8OH6|1|1|G|1017
8OH6|1|1|U|1018
8OH6|1|1|U|1019
8OH6|1|1|G|1020
8OH6|1|1|A|1021
8OH6|1|1|A|1022
8OH6|1|1|A|1023
8OH6|1|1|U|1024
8OH6|1|1|G|1025
8OH6|1|1|A|1026
8OH6|1|1|C|1027

Current chains

Chain 1

25S (gene name XR_002086444.1)

Nearby chains

Chain B

Small subunit ribosomal RNA; SSU rRNA

Chain R

40S ribosomal protein S15

Chain i

60S ribosomal protein CAALFM_C304810CA

Chain s

60S ribosomal protein L11-B