HL_8OH6_042

3D structure

PDB id

8OH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

UUAACAG

Length

7 nucleotides

Bulged bases

8OH6|1|1|C|1862

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OH6_042 not in the Motif Atlas

Homologous match to HL_8C3A_042

Geometric discrepancy: 0.0551

The information below is about HL_8C3A_042

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8OH6|1|1|U|1858
8OH6|1|1|U|1859
8OH6|1|1|A|1860
8OH6|1|1|A|1861
8OH6|1|1|C|1862
8OH6|1|1|A|1863
8OH6|1|1|G|1864

Current chains

Chain 1

25S (gene name XR_002086444.1)

Nearby chains

Chain z

60S ribosomal protein L19-A