HL_8OH6_050
3D structure
- PDB id
- 8OH6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.35 Å
Loop
- Sequence
- GGGAACGGGC
- Length
- 10 nucleotides
- Bulged bases
- 8OH6|1|1|A|2350, 8OH6|1|1|A|2351, 8OH6|1|1|C|2352
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8OH6_050 not in the Motif Atlas
- Homologous match to HL_8C3A_051
- Geometric discrepancy: 0.0373
- The information below is about HL_8C3A_051
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_90642.8
- Basepair signature
- cWW-tWH-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
8OH6|1|1|G|2347
8OH6|1|1|G|2348
8OH6|1|1|G|2349
8OH6|1|1|A|2350
8OH6|1|1|A|2351
8OH6|1|1|C|2352
8OH6|1|1|G|2353
8OH6|1|1|G|2354
8OH6|1|1|G|2355
8OH6|1|1|C|2356
Current chains
- Chain 1
- 25S (gene name XR_002086444.1)
Nearby chains
- Chain AF
- 60S ribosomal protein L32
- Chain k
- 60S ribosomal protein L3
Coloring options: