HL_8OH6_051

3D structure

PDB id

8OH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

GCUUCGGC

Length

8 nucleotides

Bulged bases

8OH6|1|1|C|2448, 8OH6|1|1|U|2450

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OH6_051 not in the Motif Atlas

Homologous match to HL_8C3A_052

Geometric discrepancy: 0.5342

The information below is about HL_8C3A_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_70228.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

1

Unit IDs

8OH6|1|1|G|2447
8OH6|1|1|C|2448
8OH6|1|1|U|2449
8OH6|1|1|U|2450
8OH6|1|1|C|2451
8OH6|1|1|G|2452
8OH6|1|1|G|2453
8OH6|1|1|C|2454

Current chains

Chain 1

25S (gene name XR_002086444.1)

Nearby chains

Chain l1

Ribosomal protein