HL_8OH6_093
3D structure
- PDB id
- 8OH6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.35 Å
Loop
- Sequence
- UGAAAG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8OH6_093 not in the Motif Atlas
- Homologous match to HL_8C3A_016
- Geometric discrepancy: 0.043
- The information below is about HL_8C3A_016
- Detailed Annotation
- GNRA
- Broad Annotation
- No text annotation
- Motif group
- HL_37824.2
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 360
Unit IDs
8OH6|1|AS|U|705
8OH6|1|AS|G|706
8OH6|1|AS|A|707
8OH6|1|AS|A|708
8OH6|1|AS|A|709
8OH6|1|AS|G|710
Current chains
- Chain AS
- 25S (gene name XR_002086444.1)
Nearby chains
- Chain BG
- 60S ribosomal protein L13
- Chain BL
- 60S ribosomal protein L18-A
- Chain BV
- 60S ribosomal protein L28
- Chain CD
- 60S ribosomal protein L36
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