HL_8OH6_106
3D structure
- PDB id
- 8OH6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.35 Å
Loop
- Sequence
- AUGAGAACU
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8OH6_106 not in the Motif Atlas
- Homologous match to HL_8C3A_031
- Geometric discrepancy: 0.0667
- The information below is about HL_8C3A_031
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_43993.1
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 141
Unit IDs
8OH6|1|AS|A|1458
8OH6|1|AS|U|1459
8OH6|1|AS|G|1460
8OH6|1|AS|A|1461
8OH6|1|AS|G|1462
8OH6|1|AS|A|1463
8OH6|1|AS|A|1464
8OH6|1|AS|C|1465
8OH6|1|AS|U|1466
Current chains
- Chain AS
- 25S (gene name XR_002086444.1)
Nearby chains
- Chain BK
- Ribosomal protein L22
- Chain BM
- 60S ribosomal protein L19-A
- Chain BY
- 60S ribosomal protein L31-B
Coloring options: