HL_8OH6_121

3D structure

PDB id

8OH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

AGAAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OH6_121 not in the Motif Atlas

Homologous match to HL_8C3A_048

Geometric discrepancy: 0.0863

The information below is about HL_8C3A_048

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8OH6|1|AS|A|2198
8OH6|1|AS|G|2199
8OH6|1|AS|A|2200
8OH6|1|AS|A|2201
8OH6|1|AS|A|2202
8OH6|1|AS|U|2203

Current chains

Chain AS

25S (gene name XR_002086444.1)

Nearby chains

Chain CD

60S ribosomal protein L36

Chain CJ

60S ribosomal protein L42-B