HL_8OH6_128
3D structure
- PDB id
- 8OH6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.35 Å
Loop
- Sequence
- AACAGAAAU
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8OH6_128 not in the Motif Atlas
- Homologous match to HL_8C3A_057
- Geometric discrepancy: 0.108
- The information below is about HL_8C3A_057
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_72777.1
- Basepair signature
- cWW-F-cWH-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
8OH6|1|AS|A|2645
8OH6|1|AS|A|2646
8OH6|1|AS|C|2647
8OH6|1|AS|A|2648
8OH6|1|AS|G|2649
8OH6|1|AS|A|2650
8OH6|1|AS|A|2651
8OH6|1|AS|A|2652
8OH6|1|AS|U|2653
Current chains
- Chain AS
- 25S (gene name XR_002086444.1)
Nearby chains
- Chain BF
- 60S ribosomal protein L11-B
- Chain CL
- 60S ribosomal protein CAALFM_C304810CA
Coloring options: