HL_8OH6_137

3D structure

PDB id

8OH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OH6_137 not in the Motif Atlas

Homologous match to HL_8C3A_066

Geometric discrepancy: 0.0496

The information below is about HL_8C3A_066

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8OH6|1|AS|C|2997
8OH6|1|AS|G|2998
8OH6|1|AS|A|2999
8OH6|1|AS|G|3000
8OH6|1|AS|A|3001
8OH6|1|AS|G|3002

Current chains

Chain AS

25S (gene name XR_002086444.1)

Nearby chains

Chain BD

60S ribosomal protein L9-B

Chain CH

60S ribosomal protein L40-B