HL_8OH6_139

3D structure

PDB id

8OH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

8OH6|1|AS|G|3088, 8OH6|1|AS|C|3092

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OH6_139 not in the Motif Atlas

Homologous match to HL_8C3A_068

Geometric discrepancy: 0.0573

The information below is about HL_8C3A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

8OH6|1|AS|C|3082
8OH6|1|AS|U|3083
8OH6|1|AS|G|3084
8OH6|1|AS|A|3085
8OH6|1|AS|A|3086
8OH6|1|AS|C|3087
8OH6|1|AS|G|3088
8OH6|1|AS|C|3089
8OH6|1|AS|C|3090
8OH6|1|AS|U|3091
8OH6|1|AS|C|3092
8OH6|1|AS|U|3093
8OH6|1|AS|A|3094
8OH6|1|AS|A|3095
8OH6|1|AS|G|3096

Current chains

Chain AS

25S (gene name XR_002086444.1)

Nearby chains

Chain BD

60S ribosomal protein L9-B

Chain BJ

Ribosomal protein L13

Chain CH

60S ribosomal protein L40-B