HL_8OH6_140

3D structure

PDB id

8OH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

UUUUUA

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OH6_140 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.3272

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

8OH6|1|AS|U|3161
8OH6|1|AS|U|3162
8OH6|1|AS|U|3163
8OH6|1|AS|U|3164
8OH6|1|AS|U|3165
8OH6|1|AS|A|3166

Current chains

Chain AS

25S (gene name XR_002086444.1)

Nearby chains

Chain BD

60S ribosomal protein L9-B

Chain BH

60S ribosomal protein L14-B

Chain BJ

Ribosomal protein L13