HL_8OH6_162

3D structure

PDB id

8OH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

CGACACG

Length

7 nucleotides

Bulged bases

8OH6|1|B|A|450, 8OH6|1|B|A|452, 8OH6|1|B|C|453

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OH6_162 not in the Motif Atlas

Homologous match to HL_8C3A_203

Geometric discrepancy: 0.0862

The information below is about HL_8C3A_203

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48417.3

Basepair signature

cWW-F-F

Number of instances in this motif group

23

Unit IDs

8OH6|1|B|C|448
8OH6|1|B|G|449
8OH6|1|B|A|450
8OH6|1|B|C|451
8OH6|1|B|A|452
8OH6|1|B|C|453
8OH6|1|B|G|454

Current chains

Chain B

18S

Nearby chains

Chain G

40S ribosomal protein S4

Chain a

40S ribosomal protein S24