HL_8OH6_165

3D structure

PDB id

8OH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

GGGUAGCCAUUUAUGGCGAACC

Length

22 nucleotides

Bulged bases

8OH6|1|B|U|703, 8OH6|1|B|U|709, 8OH6|1|B|U|713, 8OH6|1|B|C|716, 8OH6|1|B|G|717, 8OH6|1|B|A|718, 8OH6|1|B|A|719

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8OH6|1|B|G|700
8OH6|1|B|G|701
8OH6|1|B|G|702
8OH6|1|B|U|703
8OH6|1|B|A|704
8OH6|1|B|G|705
8OH6|1|B|C|706
8OH6|1|B|C|707
8OH6|1|B|A|708
8OH6|1|B|U|709
8OH6|1|B|U|710
8OH6|1|B|U|711
8OH6|1|B|A|712
8OH6|1|B|U|713
8OH6|1|B|G|714
8OH6|1|B|G|715
8OH6|1|B|C|716
8OH6|1|B|G|717
8OH6|1|B|A|718
8OH6|1|B|A|719
8OH6|1|B|C|720
8OH6|1|B|C|721

Current chains

Chain B

18S

Nearby chains

Chain G

40S ribosomal protein S4

Chain I

40S ribosomal protein S6