HL_8OH6_187

3D structure

PDB id

8OH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

GUAAUUC

Length

7 nucleotides

Bulged bases

8OH6|1|CM|U|157

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OH6_187 not in the Motif Atlas

Homologous match to HL_8C3A_194

Geometric discrepancy: 0.039

The information below is about HL_8C3A_194

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_37824.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

302

Unit IDs

8OH6|1|CM|G|152
8OH6|1|CM|U|153
8OH6|1|CM|A|154
8OH6|1|CM|A|155
8OH6|1|CM|U|156
8OH6|1|CM|U|157
8OH6|1|CM|C|158

Current chains

Chain CM

18S

Nearby chains

Chain CT

40S ribosomal protein S6

Chain DL

40S ribosomal protein S24