HL_8OH6_188

3D structure

PDB id

8OH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

UGUUUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OH6_188 not in the Motif Atlas

Homologous match to HL_8C3A_195

Geometric discrepancy: 0.0592

The information below is about HL_8C3A_195

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78347.3

Basepair signature

cWW-F-F-tSW

Number of instances in this motif group

8

Unit IDs

8OH6|1|CM|U|188
8OH6|1|CM|G|189
8OH6|1|CM|U|190
8OH6|1|CM|U|191
8OH6|1|CM|U|192
8OH6|1|CM|G|193

Current chains

Chain CM

18S

Nearby chains

Chain CV

40S ribosomal protein S8