HL_8OHD_011

3D structure

PDB id

8OHD (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosomal subunit bound to the E3-UFM1 complex - state 3 (native)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGAAGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OHD_011 not in the Motif Atlas

Homologous match to HL_8C3A_011

Geometric discrepancy: 0.1072

The information below is about HL_8C3A_011

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8OHD|1|5|U|393
8OHD|1|5|G|394
8OHD|1|5|A|395
8OHD|1|5|A|396
8OHD|1|5|G|397
8OHD|1|5|A|398

Current chains

Chain 5

28S rRNA

Nearby chains

Chain C

DDRGK domain-containing protein 1

Chain LP

60S ribosomal protein L17