HL_8OHD_051

3D structure

PDB id

8OHD (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosomal subunit bound to the E3-UFM1 complex - state 3 (native)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GACAGAAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OHD_051 not in the Motif Atlas

Homologous match to HL_8C3A_057

Geometric discrepancy: 0.176

The information below is about HL_8C3A_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_72777.1

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

8OHD|1|5|G|4250
8OHD|1|5|A|4251
8OHD|1|5|C|4252
8OHD|1|5|A|4253
8OHD|1|5|G|4254
8OHD|1|5|A|4255
8OHD|1|5|A|4256
8OHD|1|5|A|4257
8OHD|1|5|C|4258

Current chains

Chain 5

28S rRNA

Nearby chains

Chain A

E3 UFM1-protein ligase 1

Chain LJ

60S ribosomal protein L11