HL_8OHD_064

3D structure

PDB id

8OHD (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosomal subunit bound to the E3-UFM1 complex - state 3 (native)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUAGACGAC

Length

9 nucleotides

Bulged bases

8OHD|1|5|U|4976

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OHD_064 not in the Motif Atlas

Homologous match to HL_8C3A_071

Geometric discrepancy: 0.1075

The information below is about HL_8C3A_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.4

Basepair signature

cWW-cSW-F-F-F-cWW

Number of instances in this motif group

9

Unit IDs

8OHD|1|5|G|4975
8OHD|1|5|U|4976
8OHD|1|5|A|4977
8OHD|1|5|G|4978
8OHD|1|5|A|4979
8OHD|1|5|C|4980
8OHD|1|5|G|4981
8OHD|1|5|A|4982
8OHD|1|5|C|4983

Current chains

Chain 5

28S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LP

60S ribosomal protein L17