HL_8OIP_005

3D structure

PDB id

8OIP (explore in PDB, NAKB, or RNA 3D Hub)

Description

28S mammalian mitochondrial small ribosomal subunit with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GCUCAAC

Length

7 nucleotides

Bulged bases

8OIP|1|AA|U|149, 8OIP|1|AA|A|151

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OIP_005 not in the Motif Atlas

Geometric match to HL_5J7L_018

Geometric discrepancy: 0.2852

The information below is about HL_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37344.1

Basepair signature

cWW-F-F

Number of instances in this motif group

2

Unit IDs

8OIP|1|AA|G|147
8OIP|1|AA|C|148
8OIP|1|AA|U|149
8OIP|1|AA|C|150
8OIP|1|AA|A|151
8OIP|1|AA|A|152
8OIP|1|AA|C|153

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AM

28S ribosomal protein S16, mitochondrial

Chain AT

Mitochondrial ribosomal protein S25