HL_8OIP_012

3D structure

PDB id

8OIP (explore in PDB, NAKB, or RNA 3D Hub)

Description

28S mammalian mitochondrial small ribosomal subunit with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UACAUAACAAA

Length

11 nucleotides

Bulged bases

8OIP|1|AA|U|471, 8OIP|1|AA|A|476

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8OIP|1|AA|U|467
8OIP|1|AA|A|468
8OIP|1|AA|C|469
8OIP|1|AA|A|470
8OIP|1|AA|U|471
8OIP|1|AA|A|472
8OIP|1|AA|A|473
8OIP|1|AA|C|474
8OIP|1|AA|A|475
8OIP|1|AA|A|476
8OIP|1|AA|A|477

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AE

bS6m,Mitochondrial ribosomal protein S6

Chain AS

mS23

Chain Ab

Mitochondrial ribosomal protein S2

Chain Ac

Coiled-coil-helix-coiled-coil-helix domain containing 1

Chain Ad

28S ribosomal protein S5, mitochondrial isoform X2