HL_8OIP_018

3D structure

PDB id

8OIP (explore in PDB, NAKB, or RNA 3D Hub)

Description

28S mammalian mitochondrial small ribosomal subunit with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UACAUAA

Length

7 nucleotides

Bulged bases

8OIP|1|AA|A|733

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OIP_018 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.1845

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.4

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

8OIP|1|AA|U|728
8OIP|1|AA|A|729
8OIP|1|AA|C|730
8OIP|1|AA|A|731
8OIP|1|AA|U|732
8OIP|1|AA|A|733
8OIP|1|AA|A|734

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AF

Mitochondrial ribosomal protein S7

Chain AX

Death associated protein 3

Chain Ag

uS9m