HL_8OIP_022

3D structure

PDB id

8OIP (explore in PDB, NAKB, or RNA 3D Hub)

Description

28S mammalian mitochondrial small ribosomal subunit with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UGG(MA6)(MA6)A

Length

6 nucleotides

Bulged bases

8OIP|1|AA|G|943

QA status

Modified nucleotides: MA6

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OIP_022 not in the Motif Atlas

Homologous match to HL_4LFB_032

Geometric discrepancy: 0.1544

The information below is about HL_4LFB_032

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

8OIP|1|AA|U|941
8OIP|1|AA|G|942
8OIP|1|AA|G|943
8OIP|1|AA|MA6|944
8OIP|1|AA|MA6|945
8OIP|1|AA|A|946

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AD

Aurora kinase A interacting protein 1