HL_8OIP_024
3D structure
- PDB id
- 8OIP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 28S mammalian mitochondrial small ribosomal subunit with mtRF1 and P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GCCCAUACC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8OIP_024 not in the Motif Atlas
- Geometric match to HL_4TUE_034
- Geometric discrepancy: 0.1293
- The information below is about HL_4TUE_034
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.7
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 51
Unit IDs
8OIP|1|AG|G|28
8OIP|1|AG|C|29
8OIP|1|AG|C|30
8OIP|1|AG|C|31
8OIP|1|AG|A|32
8OIP|1|AG|U|33
8OIP|1|AG|A|34
8OIP|1|AG|C|35
8OIP|1|AG|C|36
Current chains
- Chain AG
- P-site Met-tRNA(fMet)
Nearby chains
- Chain AA
- Small subunit ribosomal RNA; SSU rRNA
- Chain AI
- mRNA
- Chain Aa
- Peptide chain release factor 1, mitochondrial
- Chain Ag
- uS9m
Coloring options: