HL_8OIQ_005

3D structure

PDB id

8OIQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

39S mammalian mitochondrial large ribosomal subunit with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGUAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OIQ_005 not in the Motif Atlas

Homologous match to HL_4WF9_015

Geometric discrepancy: 0.1394

The information below is about HL_4WF9_015

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

8OIQ|1|B8|C|121
8OIQ|1|B8|G|122
8OIQ|1|B8|U|123
8OIQ|1|B8|A|124
8OIQ|1|B8|A|125
8OIQ|1|B8|G|126

Current chains

Chain B8

16S rRNA

Nearby chains

Chain BJ

Mitochondrial ribosomal protein L34

Chain BN

Mitochondrial ribosomal protein L4

Chain Bq

Mitochondrial ribosomal protein L41

Chain Bu

Mitochondrial ribosomal protein L45