HL_8OIQ_007
3D structure
- PDB id
- 8OIQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 39S mammalian mitochondrial large ribosomal subunit with mtRF1 and P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- UUUUGCAUAA
- Length
- 10 nucleotides
- Bulged bases
- 8OIQ|1|B8|A|191
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8OIQ_007 not in the Motif Atlas
- Homologous match to HL_5J7L_150
- Geometric discrepancy: 0.1515
- The information below is about HL_5J7L_150
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_28252.9
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 141
Unit IDs
8OIQ|1|B8|U|183
8OIQ|1|B8|U|184
8OIQ|1|B8|U|185
8OIQ|1|B8|U|186
8OIQ|1|B8|G|187
8OIQ|1|B8|C|188
8OIQ|1|B8|A|189
8OIQ|1|B8|U|190
8OIQ|1|B8|A|191
8OIQ|1|B8|A|192
Current chains
- Chain B8
- 16S rRNA
Nearby chains
- Chain BH
- Mitochondrial ribosomal protein L32
- Chain BM
- ICT1
- Chain BT
- 39S ribosomal protein L15, mitochondrial
- Chain BZ
- Mitochondrial ribosomal protein L21
- Chain Be
- Mitochondrial ribosomal protein L57
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