HL_8OIQ_009

3D structure

PDB id

8OIQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

39S mammalian mitochondrial large ribosomal subunit with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UUUAAAAGAA

Length

10 nucleotides

Bulged bases

8OIQ|1|B8|A|274, 8OIQ|1|B8|G|276

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OIQ_009 not in the Motif Atlas

Homologous match to HL_5J7L_154

Geometric discrepancy: 0.4099

The information below is about HL_5J7L_154

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

8OIQ|1|B8|U|269
8OIQ|1|B8|U|270
8OIQ|1|B8|U|271
8OIQ|1|B8|A|272
8OIQ|1|B8|A|273
8OIQ|1|B8|A|274
8OIQ|1|B8|A|275
8OIQ|1|B8|G|276
8OIQ|1|B8|A|277
8OIQ|1|B8|A|278

Current chains

Chain B8

16S rRNA

Nearby chains

Chain BL

Mitochondrial ribosomal protein L2

Chain Bm

Mitochondrial ribosomal protein L37