HL_8OIQ_011

3D structure

PDB id

8OIQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

39S mammalian mitochondrial large ribosomal subunit with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UGAAAAG

Length

7 nucleotides

Bulged bases

8OIQ|1|B8|A|328

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OIQ_011 not in the Motif Atlas

Homologous match to HL_7RQB_024

Geometric discrepancy: 0.2816

The information below is about HL_7RQB_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74322.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

4

Unit IDs

8OIQ|1|B8|U|326
8OIQ|1|B8|G|327
8OIQ|1|B8|A|328
8OIQ|1|B8|A|329
8OIQ|1|B8|A|330
8OIQ|1|B8|A|331
8OIQ|1|B8|G|332

Current chains

Chain B8

16S rRNA

Nearby chains

Chain BL

Mitochondrial ribosomal protein L2

Chain Bu

Mitochondrial ribosomal protein L45