HL_8OIQ_014

3D structure

PDB id

8OIQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

39S mammalian mitochondrial large ribosomal subunit with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGUACAGC

Length

8 nucleotides

Bulged bases

8OIQ|1|B8|A|445, 8OIQ|1|B8|G|448

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OIQ_014 not in the Motif Atlas

Homologous match to HL_7A0S_026

Geometric discrepancy: 0.1844

The information below is about HL_7A0S_026

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

8OIQ|1|B8|G|442
8OIQ|1|B8|G|443
8OIQ|1|B8|U|444
8OIQ|1|B8|A|445
8OIQ|1|B8|C|446
8OIQ|1|B8|A|447
8OIQ|1|B8|G|448
8OIQ|1|B8|C|449

Current chains

Chain B8

16S rRNA

Nearby chains

Chain BP

Mitochondrial ribosomal protein L10

Chain BU

uL16m

Chain Be

Mitochondrial ribosomal protein L57