HL_8OIQ_016

3D structure

PDB id

8OIQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

39S mammalian mitochondrial large ribosomal subunit with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CCUAAAAGCAG

Length

11 nucleotides

Bulged bases

8OIQ|1|B8|A|515

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OIQ_016 not in the Motif Atlas

Homologous match to HL_5J7L_161

Geometric discrepancy: 0.2258

The information below is about HL_5J7L_161

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.3

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8OIQ|1|B8|C|509
8OIQ|1|B8|C|510
8OIQ|1|B8|U|511
8OIQ|1|B8|A|512
8OIQ|1|B8|A|513
8OIQ|1|B8|A|514
8OIQ|1|B8|A|515
8OIQ|1|B8|G|516
8OIQ|1|B8|C|517
8OIQ|1|B8|A|518
8OIQ|1|B8|G|519

Current chains

Chain B8

16S rRNA

Nearby chains

Chain Aa

Peptide chain release factor 1, mitochondrial

Chain BQ

Mitochondrial ribosomal protein L11

Chain Bc

mL54