HL_8OIQ_022

3D structure

PDB id

8OIQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

39S mammalian mitochondrial large ribosomal subunit with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CAACACAG

Length

8 nucleotides

Bulged bases

8OIQ|1|B8|A|762, 8OIQ|1|B8|A|764, 8OIQ|1|B8|A|766

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OIQ_022 not in the Motif Atlas

Homologous match to HL_7RQB_040

Geometric discrepancy: 0.1578

The information below is about HL_7RQB_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64430.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

8OIQ|1|B8|C|760
8OIQ|1|B8|A|761
8OIQ|1|B8|A|762
8OIQ|1|B8|C|763
8OIQ|1|B8|A|764
8OIQ|1|B8|C|765
8OIQ|1|B8|A|766
8OIQ|1|B8|G|767

Current chains

Chain B8

16S rRNA

Nearby chains

Chain BA

uL22m

Chain BJ

Mitochondrial ribosomal protein L34

Chain Bq

Mitochondrial ribosomal protein L41

Chain Bu

Mitochondrial ribosomal protein L45