HL_8OIQ_029

3D structure

PDB id

8OIQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

39S mammalian mitochondrial large ribosomal subunit with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AAACAACUCAACCACAAAGGGAUAAAACAU

Length

30 nucleotides

Bulged bases

8OIQ|1|B8|A|1096, 8OIQ|1|B8|G|1112, 8OIQ|1|B8|A|1113, 8OIQ|1|B8|U|1114, 8OIQ|1|B8|A|1120

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8OIQ|1|B8|A|1092
8OIQ|1|B8|A|1093
8OIQ|1|B8|A|1094
8OIQ|1|B8|C|1095
8OIQ|1|B8|A|1096
8OIQ|1|B8|A|1097
8OIQ|1|B8|C|1098
8OIQ|1|B8|U|1099
8OIQ|1|B8|C|1100
8OIQ|1|B8|A|1101
8OIQ|1|B8|A|1102
8OIQ|1|B8|C|1103
8OIQ|1|B8|C|1104
8OIQ|1|B8|A|1105
8OIQ|1|B8|C|1106
8OIQ|1|B8|A|1107
8OIQ|1|B8|A|1108
8OIQ|1|B8|A|1109
8OIQ|1|B8|G|1110
8OIQ|1|B8|G|1111
8OIQ|1|B8|G|1112
8OIQ|1|B8|A|1113
8OIQ|1|B8|U|1114
8OIQ|1|B8|A|1115
8OIQ|1|B8|A|1116
8OIQ|1|B8|A|1117
8OIQ|1|B8|A|1118
8OIQ|1|B8|C|1119
8OIQ|1|B8|A|1120
8OIQ|1|B8|U|1121

Current chains

Chain B8

16S rRNA

Nearby chains

Chain BO

Mitochondrial ribosomal protein L9

Chain Bj

39S ribosomal protein L1, mitochondrial