HL_8OIQ_044
3D structure
- PDB id
- 8OIQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 39S mammalian mitochondrial large ribosomal subunit with mtRF1 and P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- ACUGAA(MIA)AU
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: MIA
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8OIQ_044 not in the Motif Atlas
- Homologous match to HL_6UGG_005
- Geometric discrepancy: 0.2026
- The information below is about HL_6UGG_005
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_11974.2
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 17
Unit IDs
8OIQ|1|B9|A|32
8OIQ|1|B9|C|33
8OIQ|1|B9|U|34
8OIQ|1|B9|G|35
8OIQ|1|B9|A|36
8OIQ|1|B9|A|37
8OIQ|1|B9|MIA|38
8OIQ|1|B9|A|39
8OIQ|1|B9|U|40
Current chains
- Chain B9
- CP Phe-tRNA
Nearby chains
- Chain BD
- Mitochondrial ribosomal protein L27
- Chain BW
- Mitochondrial ribosomal protein L18
- Chain Bd
- bL31m
- Chain Bn
- Mitochondrial ribosomal protein L38
- Chain Bp
- Mitochondrial ribosomal protein L40
- Chain Bv
- Mitochondrial ribosomal protein L46
- Chain Bw
- 39S ribosomal protein L48, mitochondrial
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